Detailed information of SNP:
|
SNP ID:
sf0608186837(Gbrowse)
Chromosome: chr06 Position: 8186837 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 56.57% | 43.43% |
| All Indica | 797 | 73.53% | 26.47% |
| All Japonica | 497 | 23.34% | 76.66% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 60.53% | 39.47% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 209 | 77.03% | 22.97% |
| Temperate Japonica | 335 | 33.13% | 66.87% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608186837 | T->C | INTERGENIC | None |