Detailed information of SNP:
|
SNP ID:
sf0608188643(Gbrowse)
Chromosome: chr06 Position: 8188643 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 74.49% | 25.51% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 497 | 45.07% | 54.93% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 61.19% | 38.81% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608188643 | C->T | INTERGENIC | None |