Detailed information of SNP:
|
SNP ID:
sf0608256592(Gbrowse)
Chromosome: chr06 Position: 8256592 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 96.17% | 3.83% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 62 | 17.74% | 82.26% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608256592 | G->A | LOC_Os06g14680(LOC_Os06g14680.1) | INTRON |