Detailed information of SNP:
|
SNP ID:
sf0608276817(Gbrowse)
Chromosome: chr06 Position: 8276817 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 61.24% | 38.76% |
| All Indica | 799 | 74.47% | 25.53% |
| All Japonica | 497 | 47.48% | 52.52% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 60.80% | 39.20% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 335 | 25.37% | 74.63% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608276817 | A->C | INTERGENIC | None |