Detailed information of SNP:



SNP ID: sf0608277040(Gbrowse)

Chromosome: chr06

Position: 8277040
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1412 59.63% 40.37%
All Indica799 74.47% 25.53%
All Japonica492 43.50% 56.50%
Aus67 5.97% 94.03%
Indica I375 60.80% 39.20%
Indica II213 95.31% 4.69%
Indica Intermediate211 77.73% 22.27%
Temperate Japonica334 24.55% 75.45%
Tropical Japonica91 84.62% 15.38%
Japonica Intermediate67 82.09% 17.91%
Group VI/Aromatic14 28.57% 71.43%
Intermediate40 62.50% 37.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0608277040 T->C INTERGENIC None