Detailed information of SNP:
|
SNP ID:
sf0608277040(Gbrowse)
Chromosome: chr06 Position: 8277040 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 59.63% | 40.37% |
| All Indica | 799 | 74.47% | 25.53% |
| All Japonica | 492 | 43.50% | 56.50% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 60.80% | 39.20% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 77.73% | 22.27% |
| Temperate Japonica | 334 | 24.55% | 75.45% |
| Tropical Japonica | 91 | 84.62% | 15.38% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 62.50% | 37.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608277040 | T->C | INTERGENIC | None |