Detailed information of SNP:
|
SNP ID:
sf0608358757(Gbrowse)
Chromosome: chr06 Position: 8358757 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 95.96% | 4.04% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 488 | 91.39% | 8.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 95.18% | 4.82% |
| Tropical Japonica | 90 | 87.78% | 12.22% |
| Japonica Intermediate | 66 | 77.27% | 22.73% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608358757 | C->T | INTERGENIC | None |