Detailed information of SNP:
|
SNP ID:
sf0608383984(Gbrowse)
Chromosome: chr06 Position: 8383984 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 79.67% | 20.33% |
| All Indica | 796 | 99.50% | 0.50% |
| All Japonica | 495 | 48.89% | 51.11% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 70.27% | 29.73% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608383984 | T->G | INTERGENIC | None |