Detailed information of SNP:
|
SNP ID:
sf0608389669(Gbrowse)
Chromosome: chr06 Position: 8389669 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1339 | 90.07% | 9.93% |
| All Indica | 727 | 88.86% | 11.14% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 61 | 29.51% | 70.49% |
| Indica I | 336 | 84.52% | 15.48% |
| Indica II | 196 | 97.45% | 2.55% |
| Indica Intermediate | 195 | 87.69% | 12.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608389669 | C->T | INTERGENIC | None |