Detailed information of SNP:
|
SNP ID:
sf0608453379(Gbrowse)
Chromosome: chr06 Position: 8453379 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1331 | 79.71% | 20.29% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 415 | 53.98% | 46.02% |
| Aus | 64 | 9.38% | 90.62% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 280 | 71.79% | 28.21% |
| Tropical Japonica | 84 | 11.90% | 88.10% |
| Japonica Intermediate | 51 | 25.49% | 74.51% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608453379 | G->A | INTERGENIC | None |