Detailed information of SNP:
|
SNP ID:
sf0608454357(Gbrowse)
Chromosome: chr06 Position: 8454357 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 50.21% | 49.79% |
| All Indica | 791 | 85.46% | 14.54% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 372 | 82.80% | 17.20% |
| Indica II | 212 | 93.40% | 6.60% |
| Indica Intermediate | 207 | 82.13% | 17.87% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608454357 | T->C | INTERGENIC | None |