Detailed information of SNP:
|
SNP ID:
sf0608455978(Gbrowse)
Chromosome: chr06 Position: 8455978 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1316 | 93.09% | 6.91% |
| All Indica | 706 | 87.54% | 12.46% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 317 | 82.33% | 17.67% |
| Indica II | 196 | 95.92% | 4.08% |
| Indica Intermediate | 193 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 94.59% | 5.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608455978 | G->A | LOC_Os06g14890(LOC_Os06g14890.1) | INTRON |