Detailed information of SNP:
|
SNP ID:
sf0608462693(Gbrowse)
Chromosome: chr06 Position: 8462693 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 90.06% | 9.94% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 85.11% | 14.89% |
| Aus | 66 | 18.18% | 81.82% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608462693 | G->A | LOC_Os06g14900(LOC_Os06g14900.1) | Non-Synonymous SNP |