Detailed information of SNP:
|
SNP ID:
sf0608468057(Gbrowse)
Chromosome: chr06 Position: 8468057 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 57.09% | 42.91% |
| All Indica | 756 | 24.60% | 75.40% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 346 | 32.08% | 67.92% |
| Indica II | 210 | 14.29% | 85.71% |
| Indica Intermediate | 200 | 22.50% | 77.50% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608468057 | A->G | LOC_Os06g14920(LOC_Os06g14920.1) | Non-Synonymous SNP |