Detailed information of SNP:
|
SNP ID:
sf0608478611(Gbrowse)
Chromosome: chr06 Position: 8478611 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 51.84% | 48.16% |
| All Indica | 796 | 89.45% | 10.55% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 87.43% | 12.57% |
| Indica II | 211 | 90.05% | 9.95% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608478611 | G->A | INTERGENIC | None |