Detailed information of SNP:
|
SNP ID:
sf0608521055(Gbrowse)
Chromosome: chr06 Position: 8521055 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 53.21% | 46.79% |
| All Indica | 780 | 84.62% | 15.38% |
| All Japonica | 497 | 12.88% | 87.12% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 359 | 81.34% | 18.66% |
| Indica II | 210 | 87.62% | 12.38% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 18.81% | 81.19% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608521055 | G->A | LOC_Os06g15030(LOC_Os06g15030.1) | Synonymous |