Detailed information of SNP:
|
SNP ID:
sf0608527872(Gbrowse)
Chromosome: chr06 Position: 8527872 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 53.49% | 46.51% |
| All Indica | 787 | 92.12% | 7.88% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 368 | 90.76% | 9.24% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 206 | 94.17% | 5.83% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608527872 | G->A | INTERGENIC | None |