Detailed information of SNP:
|
SNP ID:
sf0608531316(Gbrowse)
Chromosome: chr06 Position: 8531316 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 57.15% | 42.85% |
| All Indica | 793 | 96.47% | 3.53% |
| All Japonica | 497 | 3.22% | 96.78% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608531316 | A->C | LOC_Os06g15050(LOC_Os06g15050.1) | INTRON |