Detailed information of SNP:
|
SNP ID:
sf0608563756(Gbrowse)
Chromosome: chr06 Position: 8563756 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1402 | 96.22% | 3.78% |
| All Indica | 784 | 94.52% | 5.48% |
| All Japonica | 495 | 98.38% | 1.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 96.77% | 3.23% |
| Indica II | 205 | 90.73% | 9.27% |
| Indica Intermediate | 208 | 94.23% | 5.77% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608563756 | A->G | LOC_Os06g15110(LOC_Os06g15110.1) | INTRON |