Detailed information of SNP:
|
SNP ID:
sf0608568348(Gbrowse)
Chromosome: chr06 Position: 8568348 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1383 | 50.90% | 49.10% |
| All Indica | 765 | 80.92% | 19.08% |
| All Japonica | 497 | 12.88% | 87.12% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 352 | 74.72% | 25.28% |
| Indica II | 208 | 87.98% | 12.02% |
| Indica Intermediate | 205 | 84.39% | 15.61% |
| Temperate Japonica | 335 | 18.81% | 81.19% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608568348 | T->C | INTERGENIC | None |