Detailed information of SNP:
|
SNP ID:
sf0608569504(Gbrowse)
Chromosome: chr06 Position: 8569504 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 55.26% | 44.74% |
| All Indica | 786 | 22.65% | 77.35% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 365 | 29.86% | 70.14% |
| Indica II | 213 | 15.96% | 84.04% |
| Indica Intermediate | 208 | 16.83% | 83.17% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608569504 | T->A | INTERGENIC | None |