Detailed information of SNP:
|
SNP ID:
sf0608612112(Gbrowse)
Chromosome: chr06 Position: 8612112 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1326 | 64.25% | 35.75% |
| All Indica | 711 | 34.74% | 65.26% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 323 | 32.51% | 67.49% |
| Indica II | 199 | 31.16% | 68.84% |
| Indica Intermediate | 189 | 42.33% | 57.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608612112 | G->A | LOC_Os06g15200(LOC_Os06g15200.1) | INTRON |