Detailed information of SNP:
|
SNP ID:
sf0608632241(Gbrowse)
Chromosome: chr06 Position: 8632241 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 59.50% | 40.50% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 476 | 1.89% | 98.11% |
| Aus | 65 | 0.00% | 100.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 323 | 0.62% | 99.38% |
| Tropical Japonica | 88 | 3.41% | 96.59% |
| Japonica Intermediate | 65 | 6.15% | 93.85% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608632241 | G->A | INTERGENIC | None |