Detailed information of SNP:
|
SNP ID:
sf0608635015(Gbrowse)
Chromosome: chr06 Position: 8635015 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 66.52% | 33.48% |
| All Indica | 767 | 62.84% | 37.16% |
| All Japonica | 497 | 67.61% | 32.39% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 359 | 53.76% | 46.24% |
| Indica II | 205 | 74.15% | 25.85% |
| Indica Intermediate | 203 | 67.49% | 32.51% |
| Temperate Japonica | 335 | 52.54% | 47.46% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608635015 | G->A | INTERGENIC | None |