Detailed information of SNP:
|
SNP ID:
sf0608637904(Gbrowse)
Chromosome: chr06 Position: 8637904 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 92.11% | 7.89% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 490 | 88.16% | 11.84% |
| Aus | 62 | 35.48% | 64.52% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 89 | 53.93% | 46.07% |
| Japonica Intermediate | 67 | 88.06% | 11.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608637904 | G->A | INTERGENIC | None |