Detailed information of SNP:
|
SNP ID:
sf0608649181(Gbrowse)
Chromosome: chr06 Position: 8649181 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 68.56% | 31.44% |
| All Indica | 792 | 97.22% | 2.78% |
| All Japonica | 497 | 33.00% | 67.00% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 211 | 94.79% | 5.21% |
| Indica Intermediate | 208 | 98.08% | 1.92% |
| Temperate Japonica | 335 | 48.66% | 51.34% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608649181 | G->C | INTERGENIC | None |