Detailed information of SNP:
|
SNP ID:
sf0608649271(Gbrowse)
Chromosome: chr06 Position: 8649271 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1254 | 87.72% | 12.28% |
| All Indica | 637 | 78.02% | 21.98% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 276 | 77.54% | 22.46% |
| Indica II | 191 | 78.01% | 21.99% |
| Indica Intermediate | 170 | 78.82% | 21.18% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608649271 | T->C | INTERGENIC | None |