Detailed information of SNP:
SNP ID:
sf0608660477(Gbrowse)
Chromosome: chr06 Position: 8660477 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1418 | 93.58% | 6.42% |
All Indica | 798 | 98.37% | 1.63% |
All Japonica | 497 | 84.51% | 15.49% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 98.40% | 1.60% |
Indica II | 213 | 97.18% | 2.82% |
Indica Intermediate | 210 | 99.52% | 0.48% |
Temperate Japonica | 335 | 79.10% | 20.90% |
Tropical Japonica | 94 | 95.74% | 4.26% |
Japonica Intermediate | 68 | 95.59% | 4.41% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0608660477 | G->A | LOC_Os06g15260(LOC_Os06g15260.1) | INTRON |