Detailed information of SNP:
|
SNP ID:
sf0608662056(Gbrowse)
Chromosome: chr06 Position: 8662056 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 54.33% | 45.67% |
| All Indica | 778 | 93.83% | 6.17% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 365 | 95.89% | 4.11% |
| Indica II | 208 | 87.02% | 12.98% |
| Indica Intermediate | 205 | 97.07% | 2.93% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608662056 | A->G | LOC_Os06g15260(LOC_Os06g15260.1) | INTRON |