Detailed information of SNP:
|
SNP ID:
sf0608668136(Gbrowse)
Chromosome: chr06 Position: 8668136 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 96.43% | 3.57% |
| All Indica | 780 | 94.36% | 5.64% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 94.52% | 5.48% |
| Indica II | 210 | 93.81% | 6.19% |
| Indica Intermediate | 205 | 94.63% | 5.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608668136 | T->A | INTERGENIC | None |