Detailed information of SNP:
|
SNP ID:
sf0608679832(Gbrowse)
Chromosome: chr06 Position: 8679832 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 96.88% | 3.12% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 491 | 92.67% | 7.33% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 98.50% | 1.50% |
| Tropical Japonica | 91 | 69.23% | 30.77% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608679832 | C->A | LOC_Os06g15300(LOC_Os06g15300.1) | INTRON |