Detailed information of SNP:
|
SNP ID:
sf0608699391(Gbrowse)
Chromosome: chr06 Position: 8699391 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 95.04% | 4.96% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 472 | 87.29% | 12.71% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 319 | 96.87% | 3.13% |
| Tropical Japonica | 89 | 51.69% | 48.31% |
| Japonica Intermediate | 64 | 89.06% | 10.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608699391 | T->C | INTERGENIC | None |