Detailed information of SNP:
|
SNP ID:
sf0608709018(Gbrowse)
Chromosome: chr06 Position: 8709018 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1305 | 59.16% | 40.84% |
| All Indica | 690 | 27.54% | 72.46% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 317 | 30.28% | 69.72% |
| Indica II | 190 | 20.53% | 79.47% |
| Indica Intermediate | 183 | 30.05% | 69.95% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 59.46% | 40.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608709018 | T->C | LOC_Os06g15340(LOC_Os06g15340.1) | Synonymous |