Detailed information of SNP:
|
SNP ID:
sf0608710441(Gbrowse)
Chromosome: chr06 Position: 8710441 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1380 | 86.09% | 13.91% |
| All Indica | 768 | 75.65% | 24.35% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 355 | 66.48% | 33.52% |
| Indica II | 208 | 88.94% | 11.06% |
| Indica Intermediate | 205 | 78.05% | 21.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608710441 | G->A | INTERGENIC | None |