Detailed information of SNP:
|
SNP ID:
sf0608716176(Gbrowse)
Chromosome: chr06 Position: 8716176 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 64.88% | 35.12% |
| All Indica | 783 | 39.72% | 60.28% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 96.92% | 3.08% |
| Indica I | 369 | 48.51% | 51.49% |
| Indica II | 210 | 28.57% | 71.43% |
| Indica Intermediate | 204 | 35.29% | 64.71% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608716176 | C->T | LOC_Os06g15350(LOC_Os06g15350.1) | Non-Synonymous SNP |