Detailed information of SNP:
|
SNP ID:
sf0608755077(Gbrowse)
Chromosome: chr06 Position: 8755077 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 83.01% | 16.99% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 463 | 65.44% | 34.56% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 315 | 88.57% | 11.43% |
| Tropical Japonica | 90 | 4.44% | 95.56% |
| Japonica Intermediate | 58 | 34.48% | 65.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608755077 | C->T | LOC_Os06g15410(LOC_Os06g15410.1) | INTRON |