Detailed information of SNP:
|
SNP ID:
sf0608825345(Gbrowse)
Chromosome: chr06 Position: 8825345 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 59.77% | 40.23% |
| All Indica | 797 | 30.99% | 69.01% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 41.60% | 58.40% |
| Indica II | 213 | 18.31% | 81.69% |
| Indica Intermediate | 209 | 24.88% | 75.12% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608825345 | C->A | LOC_Os06g15560(LOC_Os06g15560.1) | UTR_5_PRIME |