Detailed information of SNP:
|
SNP ID:
sf0608854555(Gbrowse)
Chromosome: chr06 Position: 8854555 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 94.02% | 5.98% |
| All Indica | 785 | 94.14% | 5.86% |
| All Japonica | 483 | 94.00% | 6.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 368 | 95.92% | 4.08% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 207 | 87.92% | 12.08% |
| Temperate Japonica | 327 | 96.94% | 3.06% |
| Tropical Japonica | 90 | 82.22% | 17.78% |
| Japonica Intermediate | 66 | 95.45% | 4.55% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608854555 | A->G | LOC_Os06g15630(LOC_Os06g15630.1) | Synonymous |