Detailed information of SNP:
|
SNP ID:
sf0608859295(Gbrowse)
Chromosome: chr06 Position: 8859295 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 99.00% | 1.00% |
| All Indica | 794 | 99.87% | 0.13% |
| All Japonica | 489 | 97.34% | 2.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 87 | 85.06% | 14.94% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608859295 | C->T | LOC_Os06g15640(LOC_Os06g15640.1) | Synonymous |