Detailed information of SNP:
|
SNP ID:
sf0608859705(Gbrowse)
Chromosome: chr06 Position: 8859705 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 90.76% | 9.24% |
| All Indica | 789 | 87.71% | 12.29% |
| All Japonica | 496 | 94.56% | 5.44% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 372 | 89.52% | 10.48% |
| Indica II | 210 | 85.24% | 14.76% |
| Indica Intermediate | 207 | 86.96% | 13.04% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 75.27% | 24.73% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608859705 | C->T | LOC_Os06g15640(LOC_Os06g15640.1) | INTRON |