Detailed information of SNP:
|
SNP ID:
sf0608859842(Gbrowse)
Chromosome: chr06 Position: 8859842 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1359 | 92.86% | 7.14% |
| All Indica | 757 | 93.53% | 6.47% |
| All Japonica | 488 | 95.29% | 4.71% |
| Aus | 62 | 75.81% | 24.19% |
| Indica I | 359 | 96.38% | 3.62% |
| Indica II | 199 | 90.45% | 9.55% |
| Indica Intermediate | 199 | 91.46% | 8.54% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 87 | 86.21% | 13.79% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608859842 | C->T | LOC_Os06g15640(LOC_Os06g15640.1) | Synonymous |