Detailed information of SNP:
|
SNP ID:
sf0608859853(Gbrowse)
Chromosome: chr06 Position: 8859853 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1350 | 90.89% | 9.11% |
| All Indica | 748 | 90.24% | 9.76% |
| All Japonica | 489 | 95.09% | 4.91% |
| Aus | 61 | 73.77% | 26.23% |
| Indica I | 356 | 94.10% | 5.90% |
| Indica II | 198 | 84.85% | 15.15% |
| Indica Intermediate | 194 | 88.66% | 11.34% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 89 | 84.27% | 15.73% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608859853 | C->T | LOC_Os06g15640(LOC_Os06g15640.1) | Synonymous |