Detailed information of SNP:
|
SNP ID:
sf0608867764(Gbrowse)
Chromosome: chr06 Position: 8867764 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 97.59% | 2.41% |
| All Indica | 793 | 97.86% | 2.14% |
| All Japonica | 495 | 97.58% | 2.42% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 207 | 96.14% | 3.86% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608867764 | A->G | LOC_Os06g15660(LOC_Os06g15660.1) | Synonymous |