Detailed information of SNP:
|
SNP ID:
sf0608924486(Gbrowse)
Chromosome: chr06 Position: 8924486 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 58.63% | 41.37% |
| All Indica | 794 | 28.59% | 71.41% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 31.27% | 68.73% |
| Indica II | 212 | 28.77% | 71.23% |
| Indica Intermediate | 211 | 23.70% | 76.30% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608924486 | C->T | LOC_Os06g15740(LOC_Os06g15740.1) | INTRON |