Detailed information of SNP:
|
SNP ID:
sf0608925538(Gbrowse)
Chromosome: chr06 Position: 8925538 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 96.25% | 3.75% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 493 | 91.68% | 8.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 66 | 80.30% | 19.70% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608925538 | G->A | LOC_Os06g15740(LOC_Os06g15740.1) | INTRON |