Detailed information of SNP:
|
SNP ID:
sf0608947577(Gbrowse)
Chromosome: chr06 Position: 8947577 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 70.87% | 29.13% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 496 | 49.19% | 50.81% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 70.45% | 29.55% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0608947577 | T->G | INTERGENIC | None |