Detailed information of SNP:
|
SNP ID:
sf0609006803(Gbrowse)
Chromosome: chr06 Position: 9006803 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 80.47% | 19.53% |
| All Indica | 799 | 92.24% | 7.76% |
| All Japonica | 496 | 59.88% | 40.12% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 334 | 75.15% | 24.85% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609006803 | G->A | LOC_Os06g15860(LOC_Os06g15860.1) | Synonymous |