Detailed information of SNP:
|
SNP ID:
sf0609019768(Gbrowse)
Chromosome: chr06 Position: 9019768 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 75.86% | 24.14% |
| All Indica | 799 | 92.24% | 7.76% |
| All Japonica | 496 | 59.27% | 40.73% |
| Aus | 66 | 6.06% | 93.94% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 79.34% | 20.66% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 74.63% | 25.37% |
| Tropical Japonica | 93 | 18.28% | 81.72% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609019768 | C->T | INTERGENIC | None |