Detailed information of SNP:
|
SNP ID:
sf0609029569(Gbrowse)
Chromosome: chr06 Position: 9029569 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1344 | 96.65% | 3.35% |
| All Indica | 792 | 99.37% | 0.63% |
| All Japonica | 433 | 92.61% | 7.39% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 308 | 94.48% | 5.52% |
| Tropical Japonica | 74 | 87.84% | 12.16% |
| Japonica Intermediate | 51 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609029569 | A->C | INTERGENIC | None |