Detailed information of SNP:
|
SNP ID:
sf0609054059(Gbrowse)
Chromosome: chr06 Position: 9054059 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 80.17% | 19.83% |
| All Indica | 798 | 73.81% | 26.19% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 375 | 61.33% | 38.67% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 74.29% | 25.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609054059 | T->C | INTERGENIC | None |