Detailed information of SNP:
|
SNP ID:
sf0609096641(Gbrowse)
Chromosome: chr06 Position: 9096641 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 86.17% | 13.83% |
| All Indica | 797 | 76.16% | 23.84% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 64.97% | 35.03% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0609096641 | T->A | LOC_Os06g15995(LOC_Os06g15995.1) | UTR_3_PRIME |